PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090068.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 467aa    MW: 51788.8 Da    PI: 4.6294
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090068.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-341392302102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++++++d+e+++++swse  +sfvv+d++ef+k+ L+kyFkhsnf+SF+RQLn+YgFkkv+ ++         weF+++ F+ gk++ll++
  XP_010090068.1 139 FLNKTFQMVDDPETDSVVSWSEGRDSFVVWDSHEFSKNHLSKYFKHSNFSSFIRQLNTYGFKKVDPDK---------WEFANEGFQGGKRHLLKN 224
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  XP_010090068.1 225 IKRRSK 230
                     ****87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-56135228IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.5E-37135228IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.86E-33135228IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-16139162IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-30139228IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-16177189IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340178202IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-16190202IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVAVADGCGG GGFSPFPNTQ FPRISTETEE NDAVEAEKEE LVLLPVKEEK TAASFDGGSS  60
SSSSPTAGLP RSPSPPPPPA SVDEEAATRV VKIKEESVEL FEEVEEDFVN GGCGCSSTSS  120
PAVSPRPMEG LHEAGPPPFL NKTFQMVDDP ETDSVVSWSE GRDSFVVWDS HEFSKNHLSK  180
YFKHSNFSSF IRQLNTYGFK KVDPDKWEFA NEGFQGGKRH LLKNIKRRSK YNKQPQGTLA  240
SSDSAKAGLE SEINTLKDDK NSLKLEILKV GQQQKDSQNQ LTAVEERIRC AECRQHQMLL  300
FLTKTVINPT FAQQLIQMRR QKRELDGVEI AKRRRILSTP DPEHVAMQSI LTENLTDTAN  360
TTTTTSTQPP KELNFPATMN GESCSAIQDI HEEAKEMRGA SLGSDMFSAY NVMSENLLDD  420
ISVLEEEMSV NDSKFYHELE DLIEKPRDWG GYMTSLIEQT GCIGSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-2213422812120Heat shock factor protein 1
5d5u_B6e-2213422821129Heat shock factor protein 1
5d5v_B6e-2213422821129Heat shock factor protein 1
5d5v_D6e-2213422821129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227LKNIKRR
2331335KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090068.10.0Heat stress transcription factor A-2
TrEMBLW9QJR80.0W9QJR8_9R
STRINGPOPTR_0006s15050.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-87heat shock transcription factor A2